Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042502.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8490295 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 40552 | 0.4776276913817482 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 28502 | 0.3357009385421826 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28439 | 0.3349589148551375 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12193 | 0.14361102882762022 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 10165 | 0.1197249329970278 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 9622 | 0.11332939550392537 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGGAC | 1260 | 0.0 | 18.059525 | 7 |
ACGGACC | 1305 | 0.0 | 17.578543 | 8 |
GGTATCA | 19285 | 0.0 | 17.219341 | 1 |
AAGACGG | 1440 | 0.0 | 16.70139 | 5 |
TCTAGCG | 1145 | 0.0 | 16.48035 | 28 |
CTAGCGG | 1155 | 0.0 | 16.337662 | 29 |
CGTAGCG | 575 | 0.0 | 15.765218 | 15 |
TATACTG | 1210 | 0.0 | 15.747933 | 5 |
CGGACCA | 1470 | 0.0 | 15.479591 | 9 |
TAGCGGA | 580 | 0.0 | 15.310345 | 17 |
GTATTAG | 2605 | 0.0 | 14.984646 | 1 |
TCGTAGC | 670 | 0.0 | 14.910447 | 14 |
CGGTCCA | 1330 | 0.0 | 14.605263 | 10 |
TTAACGG | 600 | 0.0 | 14.491666 | 35 |
TAACGGC | 630 | 0.0 | 14.095239 | 36 |
GTATAGG | 1940 | 0.0 | 13.636598 | 1 |
TCTATAC | 1120 | 0.0 | 13.544643 | 3 |
TAGTACG | 525 | 0.0 | 13.390475 | 4 |
CGCAATA | 1385 | 0.0 | 13.357401 | 36 |
AGACGGA | 1735 | 0.0 | 13.328529 | 6 |