ERR1042491.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1042491.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	262376
Sequences flagged as poor quality	0
Sequence length	43
%GC	54

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC	558	0.21267189072171236	No Hit
CCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC	469	0.17875110528401988	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA	458	0.17455864865688933	No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC	417	0.1589322194103119	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	321	0.12234350702808185	No Hit
GGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC	304	0.11586425587706192	No Hit
ACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCG	300	0.11433972619446901	No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGG	295	0.11243406409122784	No Hit
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATC	284	0.10824160746409732	No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTG	280	0.1067170777815044	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTGTCG	30	3.5919776E-4	30.833332	8
TATTACT	25	0.005488711	29.599998	17
CTTTATA	25	0.005488711	29.599998	2
ACGGAAT	75	3.7180507E-7	22.199999	18
CAAGACT	70	5.0771996E-6	21.142857	4
TCCATTA	45	0.0038180607	20.555555	8
CTATTCC	45	0.0038180607	20.555555	4
GTCCTAT	55	5.1285676E-4	20.181818	1
AGTGTTC	55	5.1285676E-4	20.181818	8
GTCGGGA	55	5.1285676E-4	20.181818	2
ACAACAC	140	3.6379788E-12	19.821428	3
CACGGAA	85	1.2378296E-6	19.588234	17
CACACGC	155	1.8189894E-12	19.096775	8
AGACTTT	60	9.2109403E-4	18.5	6
GAGCTAT	90	2.1393626E-6	18.5	32
GCACACG	160	1.8189894E-12	18.5	7
ACGCTGA	160	1.8189894E-12	18.5	11
AATCGAG	90	2.1393626E-6	18.5	22
TGATAAA	50	0.0070207734	18.499998	30
CTGTCGC	50	0.0070207734	18.499998	9