Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042484.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8355764 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 57295 | 0.6856943302850583 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 55749 | 0.6671921322813809 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 42609 | 0.5099354170366708 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24380 | 0.29177463604764325 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 13794 | 0.1650836476473007 | No Hit |
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCC | 9872 | 0.11814598880485375 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 9556 | 0.1143641682555898 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 8728 | 0.10445484099359437 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATAC | 8385 | 0.10034989020752622 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAAGACG | 3185 | 0.0 | 17.65777 | 4 |
AAGACGG | 3260 | 0.0 | 17.592024 | 5 |
GACGGAC | 3165 | 0.0 | 17.126383 | 7 |
ACGGACC | 3195 | 0.0 | 17.081379 | 8 |
TCTAGCG | 1975 | 0.0 | 16.76709 | 28 |
CTAGCGG | 1990 | 0.0 | 16.547739 | 29 |
CGGACCA | 3415 | 0.0 | 16.197657 | 9 |
CGCAAGA | 3545 | 0.0 | 16.177715 | 2 |
GTAAACG | 2660 | 0.0 | 15.718045 | 27 |
AGACGGA | 3540 | 0.0 | 15.677966 | 6 |
TAAACGC | 2735 | 0.0 | 15.625228 | 28 |
TTCGGGC | 2635 | 0.0 | 15.44592 | 35 |
CGAGCCG | 3120 | 0.0 | 15.416667 | 15 |
GCGCAAG | 3815 | 0.0 | 15.178244 | 1 |
GCTTCGG | 2755 | 0.0 | 15.176043 | 33 |
CGCTTCG | 2825 | 0.0 | 14.930973 | 32 |
CGGTCCA | 2290 | 0.0 | 14.703057 | 10 |
ACGCTTC | 2920 | 0.0 | 14.508561 | 31 |
CTTCGGG | 2980 | 0.0 | 14.216443 | 34 |
AAACGCT | 3050 | 0.0 | 14.193442 | 29 |