Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042458.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10226567 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 52876 | 0.5170454562122362 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 46065 | 0.4504444160000125 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 42922 | 0.41971073968419703 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 37322 | 0.36495140549120736 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 36909 | 0.36091290459447434 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 29780 | 0.29120231647629163 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 23234 | 0.22719256618570044 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17533 | 0.17144560828673006 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 16427 | 0.16063063978361458 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 15958 | 0.1560445455449517 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC | 15218 | 0.14880849066944948 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG | 13677 | 0.13373989531384284 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 12914 | 0.126278936030048 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 11804 | 0.11542485371679469 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 11257 | 0.11007604018044374 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 10803 | 0.10563662272979779 | No Hit |
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 10658 | 0.10421874711230074 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAACGG | 415 | 0.0 | 22.289156 | 26 |
TTTAATT | 5695 | 0.0 | 21.342405 | 25 |
CCGAACG | 420 | 0.0 | 19.38095 | 25 |
ATGCGTT | 555 | 0.0 | 19.333334 | 29 |
GCGAACG | 380 | 0.0 | 18.013159 | 25 |
TTTTAAT | 7060 | 0.0 | 17.661472 | 24 |
AAGACGG | 3415 | 0.0 | 17.551977 | 5 |
ACGGACC | 3545 | 0.0 | 16.543018 | 8 |
AACGGCG | 675 | 0.0 | 16.444445 | 28 |
GACGGAC | 3555 | 0.0 | 16.392405 | 7 |
CAAGACG | 3850 | 0.0 | 16.337662 | 4 |
GCTAACC | 1230 | 0.0 | 15.9430895 | 25 |
CGGACCA | 3680 | 0.0 | 15.93614 | 9 |
CGCAAGA | 3730 | 0.0 | 15.772119 | 2 |
AATGCGT | 665 | 0.0 | 15.578948 | 28 |
TGCGTAA | 350 | 0.0 | 15.328571 | 23 |
TTAATTT | 8150 | 0.0 | 15.299386 | 26 |
AGACGGA | 3825 | 0.0 | 15.28366 | 6 |
AAAACGC | 970 | 0.0 | 15.06701 | 28 |
GCGCAAG | 4020 | 0.0 | 14.910447 | 1 |