Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042457.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8470090 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 48008 | 0.5667944496457535 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 41343 | 0.4881057934449339 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 31842 | 0.3759346122650409 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 31646 | 0.3736205872664871 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 27768 | 0.3278359497951025 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 26339 | 0.310964818555647 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 23350 | 0.2756759373277025 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 16946 | 0.20006871237495705 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 16851 | 0.19894711862565806 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC | 15743 | 0.18586579363383388 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG | 14604 | 0.17241847489223847 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 13072 | 0.15433129990354294 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG | 12185 | 0.14385915616008804 | No Hit |
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 11921 | 0.14074230616203606 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 11465 | 0.13535865616540083 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 10632 | 0.12552404992154748 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10598 | 0.12512263742179836 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC | 10590 | 0.1250281874218574 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 9450 | 0.11156906243026934 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAACGG | 300 | 0.0 | 20.966667 | 26 |
CCGAACG | 260 | 0.0 | 19.211536 | 25 |
TTTAATT | 4180 | 0.0 | 18.898325 | 25 |
GCGCGAA | 285 | 0.0 | 18.82456 | 23 |
TGCGTAA | 300 | 0.0 | 18.5 | 23 |
AATGCGT | 430 | 0.0 | 17.639534 | 28 |
TGAATCC | 1965 | 0.0 | 17.13486 | 26 |
CGCGCGA | 195 | 0.0 | 17.076923 | 22 |
AAGACGG | 2890 | 0.0 | 17.027681 | 5 |
GCTAACC | 1035 | 0.0 | 16.623188 | 25 |
ACTGAAT | 2055 | 0.0 | 16.20438 | 24 |
TTTTAAT | 4910 | 0.0 | 16.013237 | 24 |
GAATCCC | 1805 | 0.0 | 15.988919 | 27 |
CAAGACG | 3210 | 0.0 | 15.964175 | 4 |
CGCAAGA | 3060 | 0.0 | 15.900327 | 2 |
GACGGAC | 2900 | 0.0 | 15.820689 | 7 |
ACGGACC | 2925 | 0.0 | 15.558974 | 8 |
AAAACGC | 905 | 0.0 | 15.331491 | 28 |
AACGCGA | 255 | 0.0 | 15.235295 | 23 |
ACGCGAA | 280 | 0.0 | 15.196429 | 24 |