Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042442.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5086703 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 38956 | 0.7658398770284013 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 38101 | 0.7490313470237991 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 29649 | 0.5828726387209947 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 22895 | 0.45009508123434766 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 16881 | 0.3318652573189353 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15998 | 0.31450627253055663 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 14760 | 0.2901683074478695 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 10668 | 0.20972327261882598 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 8503 | 0.16716132237325435 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 8164 | 0.16049688766967524 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC | 8084 | 0.15892415971602825 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 7850 | 0.1543239304516108 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG | 7209 | 0.1417224477230143 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 5890 | 0.11579209558725957 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 5560 | 0.10930459277846574 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATAACG | 630 | 0.0 | 18.5 | 2 |
AAGACGG | 1245 | 0.0 | 18.128513 | 5 |
TATCACG | 615 | 0.0 | 17.447155 | 2 |
CAAGACG | 1325 | 0.0 | 17.173584 | 4 |
ACGGACC | 1220 | 0.0 | 17.135244 | 8 |
GACGGAC | 1230 | 0.0 | 16.995935 | 7 |
CGGACCA | 1320 | 0.0 | 16.53788 | 9 |
GTATAAC | 955 | 0.0 | 16.078533 | 1 |
TAACGCA | 805 | 0.0 | 15.8571415 | 4 |
ATAACGC | 1435 | 0.0 | 15.728223 | 3 |
TCTAGCG | 855 | 0.0 | 15.578947 | 28 |
CGCAATA | 870 | 0.0 | 15.522989 | 36 |
ATCACGC | 680 | 0.0 | 15.507352 | 3 |
CTAGCGG | 875 | 0.0 | 15.434284 | 29 |
CGCGATA | 85 | 5.36864E-4 | 15.235293 | 14 |
AGACGGA | 1445 | 0.0 | 14.9792385 | 6 |
CGCAAGA | 1465 | 0.0 | 14.901024 | 2 |
TCACGCA | 760 | 0.0 | 14.361842 | 4 |
TTAGAGT | 870 | 0.0 | 14.247127 | 4 |
TACGACG | 855 | 0.0 | 14.064327 | 5 |