FastQCFastQC Report
Thu 28 Apr 2016
ERR1042442.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042442.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5086703
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT389560.7658398770284013No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT381010.7490313470237991No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT296490.5828726387209947No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC228950.45009508123434766No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG168810.3318652573189353No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT159980.31450627253055663No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA147600.2901683074478695No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG106680.20972327261882598No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG85030.16716132237325435No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA81640.16049688766967524No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC80840.15892415971602825No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT78500.1543239304516108No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG72090.1417224477230143No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA58900.11579209558725957No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC55600.10930459277846574No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATAACG6300.018.52
AAGACGG12450.018.1285135
TATCACG6150.017.4471552
CAAGACG13250.017.1735844
ACGGACC12200.017.1352448
GACGGAC12300.016.9959357
CGGACCA13200.016.537889
GTATAAC9550.016.0785331
TAACGCA8050.015.85714154
ATAACGC14350.015.7282233
TCTAGCG8550.015.57894728
CGCAATA8700.015.52298936
ATCACGC6800.015.5073523
CTAGCGG8750.015.43428429
CGCGATA855.36864E-415.23529314
AGACGGA14450.014.97923856
CGCAAGA14650.014.9010242
TCACGCA7600.014.3618424
TTAGAGT8700.014.2471274
TACGACG8550.014.0643275