Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042435.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6388631 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6971 | 0.1091157088271337 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4050 | 0.0 | 26.585184 | 1 |
GTATCAA | 6050 | 0.0 | 17.735537 | 2 |
TATACTG | 775 | 0.0 | 15.75484 | 5 |
TCTAACG | 235 | 0.0 | 14.957447 | 2 |
GTATTAG | 1215 | 0.0 | 14.617285 | 1 |
GTACTAG | 320 | 0.0 | 14.453125 | 1 |
TAACGCC | 415 | 0.0 | 14.26506 | 4 |
ATCGTAC | 170 | 2.4427209E-8 | 14.147059 | 25 |
CTAACGC | 230 | 4.0017767E-11 | 13.673913 | 3 |
CTAGTAC | 475 | 0.0 | 13.631578 | 3 |
ATCGATA | 890 | 0.0 | 13.30337 | 23 |
TAATACT | 1280 | 0.0 | 13.296875 | 4 |
GTAATCG | 900 | 0.0 | 13.155556 | 20 |
TAATCGA | 900 | 0.0 | 12.95 | 21 |
ATCAACG | 8260 | 0.0 | 12.900726 | 4 |
TCAACGC | 8455 | 0.0 | 12.581312 | 5 |
TCTAGAC | 620 | 0.0 | 12.532258 | 3 |
TATCAAC | 8710 | 0.0 | 12.531574 | 3 |
CTAATAC | 1140 | 0.0 | 12.495614 | 3 |
AATCGAT | 925 | 0.0 | 12.4 | 22 |