Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042431.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9691400 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 60309 | 0.6222939926120066 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 48390 | 0.4993086654146976 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 45336 | 0.46779619043688214 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 31362 | 0.3236064964814165 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 22004 | 0.2270466599252946 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21588 | 0.22275419444043174 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 20192 | 0.20834967084219 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 13121 | 0.13538807602616754 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 12583 | 0.12983676249045545 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 11268 | 0.11626803145056441 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 10997 | 0.11347173782941576 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC | 10729 | 0.11070639948820603 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 10306 | 0.10634170501681904 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 3055 | 0.0 | 16.95581 | 5 |
ACGGACC | 3145 | 0.0 | 15.941176 | 8 |
GACGGAC | 3140 | 0.0 | 15.789809 | 7 |
CAAGACG | 3360 | 0.0 | 15.581846 | 4 |
CGGACCA | 3355 | 0.0 | 14.943368 | 9 |
CGCAAGA | 3380 | 0.0 | 14.942308 | 2 |
AGACGGA | 3400 | 0.0 | 14.8 | 6 |
TCTAGCG | 2440 | 0.0 | 14.709017 | 28 |
CGAGCCG | 3425 | 0.0 | 14.691971 | 15 |
TTAACGG | 400 | 0.0 | 14.337499 | 35 |
GCGCAAG | 3685 | 0.0 | 14.257802 | 1 |
TATACTG | 1230 | 0.0 | 14.138211 | 5 |
TCGTTTA | 2260 | 0.0 | 14.079647 | 30 |
CTAGCGG | 2545 | 0.0 | 14.0294695 | 29 |
CGCAATA | 2615 | 0.0 | 13.866157 | 36 |
ATAACGC | 3200 | 0.0 | 13.643749 | 3 |
CGGTCCA | 2745 | 0.0 | 13.613843 | 10 |
GTATAAC | 1140 | 0.0 | 13.469299 | 1 |
TAACGGC | 440 | 0.0 | 13.454545 | 36 |
GCTATAC | 840 | 0.0 | 13.214287 | 3 |