FastQCFastQC Report
Thu 28 Apr 2016
ERR1042431.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042431.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9691400
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT603090.6222939926120066No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT483900.4993086654146976No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT453360.46779619043688214No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC313620.3236064964814165No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG220040.2270466599252946No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT215880.22275419444043174No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA201920.20834967084219No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG131210.13538807602616754No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT125830.12983676249045545No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG112680.11626803145056441No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT109970.11347173782941576No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC107290.11070639948820603No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT103060.10634170501681904No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGACGG30550.016.955815
ACGGACC31450.015.9411768
GACGGAC31400.015.7898097
CAAGACG33600.015.5818464
CGGACCA33550.014.9433689
CGCAAGA33800.014.9423082
AGACGGA34000.014.86
TCTAGCG24400.014.70901728
CGAGCCG34250.014.69197115
TTAACGG4000.014.33749935
GCGCAAG36850.014.2578021
TATACTG12300.014.1382115
TCGTTTA22600.014.07964730
CTAGCGG25450.014.029469529
CGCAATA26150.013.86615736
ATAACGC32000.013.6437493
CGGTCCA27450.013.61384310
GTATAAC11400.013.4692991
TAACGGC4400.013.45454536
GCTATAC8400.013.2142873