Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042426.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1181721 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 5149 | 0.43572044501197826 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4899 | 0.4145648592180388 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 1894 | 0.16027471797488577 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 1889 | 0.159851606259007 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1525 | 0.12904907334303103 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 1185 | 0.10027747666327332 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGATA | 35 | 8.869544E-4 | 26.42857 | 14 |
ACGGACC | 350 | 0.0 | 20.614286 | 8 |
CGTCGTA | 180 | 0.0 | 20.555555 | 10 |
CGATATG | 45 | 0.0038258706 | 20.555555 | 16 |
GACGGAC | 355 | 0.0 | 20.323944 | 7 |
ATAACGA | 205 | 0.0 | 19.853657 | 12 |
CGAACGA | 210 | 0.0 | 19.380953 | 16 |
TACCGTC | 205 | 0.0 | 18.951218 | 7 |
CGCAAGA | 425 | 0.0 | 18.717648 | 2 |
CCGTCGT | 210 | 0.0 | 18.500002 | 9 |
AAGACGG | 410 | 0.0 | 18.5 | 5 |
TAACGAA | 220 | 0.0 | 18.5 | 13 |
GCGGGTA | 110 | 3.851892E-8 | 18.5 | 23 |
GCGCAAG | 415 | 0.0 | 18.27711 | 1 |
CGATAAC | 225 | 0.0 | 18.088888 | 10 |
TTATCTA | 185 | 0.0 | 18.0 | 4 |
TCCGATA | 230 | 0.0 | 17.695652 | 8 |
AGACGGA | 410 | 0.0 | 17.59756 | 6 |
GTTATCT | 200 | 0.0 | 17.574999 | 3 |
TACTTCG | 85 | 2.72322E-5 | 17.411764 | 29 |