Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042423.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9353299 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 44833 | 0.47932820280844224 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 40179 | 0.4295703580095109 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 32784 | 0.3505073450554719 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14502 | 0.1550468984258923 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 10314 | 0.11027125295577528 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 9960 | 0.10648649209225537 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTAGCG | 1540 | 0.0 | 19.821428 | 28 |
CTAGCGG | 1595 | 0.0 | 18.905954 | 29 |
ACGGACC | 2280 | 0.0 | 18.662281 | 8 |
GACGGAC | 2305 | 0.0 | 18.299349 | 7 |
AAGACGG | 2500 | 0.0 | 18.204 | 5 |
CGCAAGA | 2590 | 0.0 | 17.428572 | 2 |
CGGACCA | 2540 | 0.0 | 17.188976 | 9 |
CAAGACG | 2880 | 0.0 | 16.70139 | 4 |
AGACGGA | 2695 | 0.0 | 16.337662 | 6 |
CGCAATA | 1995 | 0.0 | 15.671679 | 36 |
CGGTCCA | 1965 | 0.0 | 15.628498 | 10 |
TTAACGG | 845 | 0.0 | 15.544379 | 35 |
GGGGTTA | 1685 | 0.0 | 15.370919 | 6 |
CCGGTCC | 2095 | 0.0 | 15.10024 | 9 |
GCGAAAG | 2850 | 0.0 | 14.929824 | 18 |
CGAAAGC | 2840 | 0.0 | 14.852113 | 19 |
TAACGGC | 900 | 0.0 | 14.8 | 36 |
CGAACGA | 1215 | 0.0 | 14.465021 | 16 |
TACCGTC | 1535 | 0.0 | 14.2214985 | 7 |
GTATTAG | 2735 | 0.0 | 14.204753 | 1 |