FastQCFastQC Report
Thu 28 Apr 2016
ERR1042423.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042423.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9353299
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT448330.47932820280844224No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT401790.4295703580095109No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT327840.3505073450554719No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT145020.1550468984258923No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT103140.11027125295577528No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA99600.10648649209225537No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTAGCG15400.019.82142828
CTAGCGG15950.018.90595429
ACGGACC22800.018.6622818
GACGGAC23050.018.2993497
AAGACGG25000.018.2045
CGCAAGA25900.017.4285722
CGGACCA25400.017.1889769
CAAGACG28800.016.701394
AGACGGA26950.016.3376626
CGCAATA19950.015.67167936
CGGTCCA19650.015.62849810
TTAACGG8450.015.54437935
GGGGTTA16850.015.3709196
CCGGTCC20950.015.100249
GCGAAAG28500.014.92982418
CGAAAGC28400.014.85211319
TAACGGC9000.014.836
CGAACGA12150.014.46502116
TACCGTC15350.014.22149857
GTATTAG27350.014.2047531