FastQCFastQC Report
Thu 28 Apr 2016
ERR1042421.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042421.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3243497
Sequences flagged as poor quality0
Sequence length43
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT540131.6652705397908492No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT518591.5988607358045959No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT411351.268229938242582No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT188810.5821186207355826No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC116340.3586869357363365No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG95310.29384950872468824No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA70860.21846790670686606No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT60960.18794529484688902No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG49950.15400045074806606No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA48970.15097902048313905No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47410.14616939679611235No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC47380.1460769040329003No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG46430.1431479665311853No Hit
GTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA42240.13022981060256877No Hit
GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA41520.12800998428547952No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA41060.1265917619162281No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT40780.12572849612624892No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC39290.12113468888671702No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG39110.12057973230744472No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38040.11728082375288154No Hit
GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA37940.11697251454217471No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37400.11530764480435776No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA35180.10846318032666594No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33770.10411602045569952No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG33460.10316026190250831No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGGGA4550.018.7032972
GCGTTAC1552.1827873E-1117.90322514
TTACCGT1552.1827873E-1117.90322517
GTTACCG1603.45608E-1117.3437516
TCTTATA12850.016.7003937
TGCGTTA1708.54925E-1116.3235313
CGACCGT1751.3278623E-1015.85714319
TCGACCG1751.3278623E-1015.85714318
GGTCCGA1403.479363E-815.8571428
CGGGAGT5150.015.8058244
GCTATAC1601.0986696E-815.031253
CGTTTGA1853.0559022E-1015.021
GTGTAAG3500.014.81
ACCACGA2251.8189894E-1214.88
CGAACGA6000.014.49166716
ACGAATA3350.014.3582093
TACCGTT1956.7484507E-1014.2307718
GTCTTAC2353.6379788E-1214.1702141
TTCGCGG1601.7863931E-713.87532
GTCTCGC3350.013.805971