Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042419.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2705981 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 5018 | 0.18544106555071896 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 4579 | 0.1692177439531172 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 3708 | 0.13702978697928775 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 3368 | 0.12446502765540482 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 3367 | 0.12442807248092282 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3321 | 0.12272813445475042 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 3058 | 0.11300892356598216 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAACGC | 95 | 7.1559043E-9 | 21.421053 | 3 |
CTAGTAC | 185 | 1.8189894E-11 | 16.000002 | 3 |
CGAACGA | 575 | 0.0 | 15.443479 | 16 |
TTAACGG | 110 | 1.4532352E-5 | 15.136364 | 35 |
TCTAGAC | 275 | 0.0 | 14.8 | 3 |
ATAACGA | 615 | 0.0 | 14.739838 | 12 |
TAATACT | 420 | 0.0 | 14.535714 | 4 |
TACTCCG | 255 | 0.0 | 14.509804 | 5 |
TCGCTAA | 90 | 8.279119E-4 | 14.388889 | 14 |
TAACGAA | 645 | 0.0 | 14.054264 | 13 |
TAAGACC | 435 | 0.0 | 14.034482 | 4 |
GGTTATC | 240 | 5.456968E-12 | 13.874999 | 2 |
TCCGATA | 660 | 0.0 | 13.734848 | 8 |
TGTATCG | 95 | 0.001245836 | 13.631579 | 5 |
TACACGT | 95 | 0.001245836 | 13.631579 | 4 |
ACGGACC | 530 | 0.0 | 13.613208 | 8 |
CAAATCG | 655 | 0.0 | 13.557252 | 13 |
GTATTAG | 590 | 0.0 | 13.48305 | 1 |
TCTAATA | 305 | 0.0 | 13.344262 | 2 |
ATACCGC | 585 | 0.0 | 13.282052 | 27 |