Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042418.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9642970 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 39699 | 0.4116885150529349 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 35209 | 0.3651260970427161 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 26736 | 0.27725897726530313 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12278 | 0.12732591722259842 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 9864 | 0.10229213613648076 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGACC | 1790 | 0.0 | 16.43296 | 8 |
GACGGAC | 1865 | 0.0 | 15.772119 | 7 |
AAGACGG | 2000 | 0.0 | 15.724999 | 5 |
TCGTTTA | 1310 | 0.0 | 14.969466 | 30 |
TTAACGG | 605 | 0.0 | 14.677686 | 35 |
GTATTAG | 2120 | 0.0 | 14.485849 | 1 |
CGAGCCG | 1880 | 0.0 | 14.268616 | 15 |
CGGACCA | 2130 | 0.0 | 13.723004 | 9 |
TAACGCC | 1605 | 0.0 | 13.485982 | 4 |
AGACGGA | 2235 | 0.0 | 13.409397 | 6 |
TAATACT | 1695 | 0.0 | 13.315635 | 4 |
TAACGGC | 685 | 0.0 | 13.233577 | 36 |
TATACTG | 1425 | 0.0 | 13.112281 | 5 |
TATACCG | 495 | 0.0 | 13.080809 | 5 |
CAAGACG | 2645 | 0.0 | 12.729678 | 4 |
CGTTTAT | 1560 | 0.0 | 12.689103 | 31 |
CGAACGA | 1685 | 0.0 | 12.626114 | 16 |
TAACGAA | 1710 | 0.0 | 12.549707 | 13 |
TACCGTC | 1295 | 0.0 | 12.428572 | 7 |
ATACCGC | 2000 | 0.0 | 12.3025 | 27 |