Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042407.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8264166 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 88829 | 1.0748695028633257 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 74058 | 0.8961339837558926 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 61105 | 0.7393970547058227 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 37022 | 0.4479822888359212 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 19543 | 0.2364787928993682 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 14689 | 0.17774328347228263 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 12267 | 0.14843603093161487 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 12118 | 0.1466330661799388 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10265 | 0.12421096091245021 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9910 | 0.1199153066383226 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9195 | 0.11126349591719237 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 8393 | 0.1015589473880365 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTCGCGA | 80 | 3.385736E-4 | 16.1875 | 19 |
CAAGACG | 2200 | 0.0 | 15.893181 | 4 |
AAGACGG | 2175 | 0.0 | 15.650575 | 5 |
CGAACGT | 450 | 0.0 | 15.622222 | 4 |
GACGGAC | 2095 | 0.0 | 15.453462 | 7 |
ACGGACC | 2110 | 0.0 | 15.43128 | 8 |
CTAGACT | 605 | 0.0 | 15.289256 | 4 |
TCGAACG | 480 | 0.0 | 14.645834 | 3 |
CGGACCA | 2265 | 0.0 | 14.62031 | 9 |
CGCAAGA | 2280 | 0.0 | 14.361843 | 2 |
CGAGCCG | 1765 | 0.0 | 14.150142 | 15 |
GCGCAAG | 2395 | 0.0 | 14.135699 | 1 |
TCTAGCG | 1120 | 0.0 | 13.875 | 28 |
TCGCGAA | 135 | 6.5782842E-6 | 13.703704 | 20 |
TATACTG | 1385 | 0.0 | 13.624549 | 5 |
CGATGCG | 1490 | 0.0 | 13.533557 | 33 |
AGACGGA | 2445 | 0.0 | 13.468302 | 6 |
TACCGTC | 1735 | 0.0 | 13.435158 | 7 |
CGAACGA | 1815 | 0.0 | 13.250689 | 16 |
CTAGCGG | 1185 | 0.0 | 13.113924 | 29 |