Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042403.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3153933 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 18346 | 0.5816864213665921 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10682 | 0.3386882346581237 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 9929 | 0.3148132823366888 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 9505 | 0.30136975008663786 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 7516 | 0.23830563299854496 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 6682 | 0.2118624587142466 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 4568 | 0.1448350361279076 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4431 | 0.1404912533018298 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 4181 | 0.1325646423053375 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 3567 | 0.11309688569795236 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC | 3226 | 0.10228498829873685 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAGACT | 285 | 0.0 | 18.175438 | 4 |
AACCGTA | 65 | 0.0015807603 | 17.076923 | 7 |
CGAACGA | 425 | 0.0 | 15.235294 | 16 |
TCCGATA | 450 | 0.0 | 15.211111 | 8 |
AAGACGG | 825 | 0.0 | 15.024243 | 5 |
GTATACG | 140 | 6.00392E-7 | 14.535715 | 1 |
CCGATAA | 475 | 0.0 | 14.410527 | 9 |
TTAACGG | 105 | 1.6570758E-4 | 14.095239 | 35 |
TCTACAC | 515 | 0.0 | 14.009708 | 3 |
TAATCGG | 160 | 1.7863385E-7 | 13.875 | 16 |
CGCATCG | 570 | 0.0 | 13.307017 | 13 |
ATAACGA | 515 | 0.0 | 13.291262 | 12 |
ATTAGAC | 265 | 1.8189894E-12 | 13.26415 | 3 |
TCGCTAA | 85 | 0.009409484 | 13.058824 | 14 |
TACACCG | 285 | 0.0 | 12.982456 | 5 |
ACGAACG | 500 | 0.0 | 12.95 | 15 |
GACGGAC | 835 | 0.0 | 12.850299 | 7 |
CGAACGC | 130 | 7.005357E-5 | 12.807693 | 30 |
TTAGAGT | 650 | 0.0 | 12.807693 | 4 |
CGGACAT | 695 | 0.0 | 12.7769785 | 21 |