FastQCFastQC Report
Thu 28 Apr 2016
ERR1042395.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042395.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5556999
Sequences flagged as poor quality0
Sequence length43
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC903451.6257875878689199No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG701091.261634202201584No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA548310.9867016351811472No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT514730.9262733356619283No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG406200.7309700793539822No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC338450.6090517561727112No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT327660.5896348010859819No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT323040.5813209611878642No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG242060.43559482375289255No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT219490.3949793764584085No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC210990.37968335067182846No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG168140.30257338538300976No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT159020.28616164948023204No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA151650.2728990953570443No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT133670.24054350198731367No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC129950.23384924129012802No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT120120.21615983735105948No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG117880.2121288846731842No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG102730.18486596812416198No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT99270.17863958586280113No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA93690.16859819481702265No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG92830.16705059691390983No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC90300.16249777982684538No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC83910.1509987675002281No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG75760.13633257806956597No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC75730.13627859209620158No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT73210.13174377033359194No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGT71560.12877454179854989No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGT70930.1276408363578975No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC66540.11974088892224022No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA66330.11936298710868941No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG65940.11866116945495223No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCT64620.11628578662691859No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCT64340.11578191754218418No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT61070.10989744644546455No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA60780.10937558203627533No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG59760.10754005894188573No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59480.10703618985715131No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59010.1061904096077757No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCT58490.1052546527361261No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGC57620.10368905950855849No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC57390.10327516704609807No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGACC4450.017.4606728
GTACTAG4600.017.2934781
TGCGACG2300.016.89130422
GCGTTAT3900.015.1794871
GACGGAC4700.014.9574477
CGGACCA5750.014.1565219
GTCGTCA2900.014.03448324
ATGCGAC2800.013.87521
AAGACGG6600.013.7348485
AACCGTC1501.3079662E-613.5666677
ATAACGC5900.013.483053
GTACTCC21550.013.47795936
CGCAAGA6050.013.4545452
CAATGCG2900.013.39655119
CGACGAG3600.013.36111124
CTAGTAC5150.013.2912623
TAGACCG850.00941066213.0588255
CTATACT9800.013.0255114
GTCGTAC1000.001834017312.9500011
TTTAGCG1153.5810127E-412.86956526