FastQCFastQC Report
Thu 28 Apr 2016
ERR1042387.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042387.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5785110
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC91640.1584066681532417No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA85150.1471882124972559No Hit
CCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC71930.12433644304084106No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT71900.12428458577278564No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC71440.12348944099593612No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT69590.1202915761325195No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA63250.10933240681681074No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGACGG16350.017.7645245
GACGGAC15000.017.6366657
ACGGACC15300.017.1699358
TCTAGCG11850.016.70464128
CAAGACG18100.016.4558014
CTAGCGG12100.016.35950329
TCGTTTA12700.016.02362330
CGCAAGA17550.015.9173792
GTTCAAA22600.015.7168141
CGAACGA10950.015.5433816
CGGACCA17700.015.4689269
CGAGCCG20450.015.28850815
AGACGGA17950.015.2534826
CGTTTAT13500.015.07407431
GCGCAAG19850.014.818641
TAACGAA12000.014.49166613
ACGAACG12050.014.43153515
ATAACGA12700.013.98425212
GTAAACG10250.013.8975627
AACGAAC12600.013.80158714