Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042387.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5785110 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 53 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 9164 | 0.1584066681532417 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 8515 | 0.1471882124972559 | No Hit |
CCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC | 7193 | 0.12433644304084106 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 7190 | 0.12428458577278564 | No Hit |
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC | 7144 | 0.12348944099593612 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 6959 | 0.1202915761325195 | No Hit |
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA | 6325 | 0.10933240681681074 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 1635 | 0.0 | 17.764524 | 5 |
GACGGAC | 1500 | 0.0 | 17.636665 | 7 |
ACGGACC | 1530 | 0.0 | 17.169935 | 8 |
TCTAGCG | 1185 | 0.0 | 16.704641 | 28 |
CAAGACG | 1810 | 0.0 | 16.455801 | 4 |
CTAGCGG | 1210 | 0.0 | 16.359503 | 29 |
TCGTTTA | 1270 | 0.0 | 16.023623 | 30 |
CGCAAGA | 1755 | 0.0 | 15.917379 | 2 |
GTTCAAA | 2260 | 0.0 | 15.716814 | 1 |
CGAACGA | 1095 | 0.0 | 15.54338 | 16 |
CGGACCA | 1770 | 0.0 | 15.468926 | 9 |
CGAGCCG | 2045 | 0.0 | 15.288508 | 15 |
AGACGGA | 1795 | 0.0 | 15.253482 | 6 |
CGTTTAT | 1350 | 0.0 | 15.074074 | 31 |
GCGCAAG | 1985 | 0.0 | 14.81864 | 1 |
TAACGAA | 1200 | 0.0 | 14.491666 | 13 |
ACGAACG | 1205 | 0.0 | 14.431535 | 15 |
ATAACGA | 1270 | 0.0 | 13.984252 | 12 |
GTAAACG | 1025 | 0.0 | 13.89756 | 27 |
AACGAAC | 1260 | 0.0 | 13.801587 | 14 |