Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042380.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11222767 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 57625 | 0.5134651730718458 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 42224 | 0.3762352011763231 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 41271 | 0.3677435341925926 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21694 | 0.1933034874554555 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 11302 | 0.1007060023610933 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 11297 | 0.10066145006841895 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 23145 | 0.0 | 18.480017 | 1 |
AAGACGG | 2475 | 0.0 | 17.266666 | 5 |
TCTAGCG | 1495 | 0.0 | 16.086958 | 28 |
GACGGAC | 2445 | 0.0 | 15.88957 | 7 |
ACGGACC | 2535 | 0.0 | 15.617356 | 8 |
CTAGCGG | 1555 | 0.0 | 15.347266 | 29 |
TTAACGG | 550 | 0.0 | 15.136364 | 35 |
CGCAAGA | 2720 | 0.0 | 14.759191 | 2 |
AGACGGA | 2815 | 0.0 | 14.39254 | 6 |
TATACTG | 1835 | 0.0 | 14.316076 | 5 |
CGGACCA | 2840 | 0.0 | 14.265845 | 9 |
TCGTTTA | 1665 | 0.0 | 13.888889 | 30 |
TAACGGC | 600 | 0.0 | 13.875 | 36 |
GCGCAAG | 3230 | 0.0 | 13.287926 | 1 |
CGAACGA | 1800 | 0.0 | 13.155556 | 16 |
GTATTAG | 3480 | 0.0 | 13.024425 | 1 |
TCTATCG | 715 | 0.0 | 12.678322 | 31 |
GTATCAA | 33620 | 0.0 | 12.66166 | 2 |
CAAGACG | 3700 | 0.0 | 12.6 | 4 |
TCTATAC | 1430 | 0.0 | 12.41958 | 3 |