Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042373.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11715585 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 99778 | 0.8516689520839121 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 88158 | 0.7524848311031843 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 78141 | 0.6669833388601594 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 47801 | 0.4080120625645241 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16017 | 0.13671532407472609 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14734 | 0.12576409970138067 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11795 | 0.10067785774248575 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTAGCG | 1520 | 0.0 | 15.944079 | 28 |
CTAGCGG | 1585 | 0.0 | 15.4069395 | 29 |
TCGTTTA | 1660 | 0.0 | 15.268072 | 30 |
ACGGACC | 2175 | 0.0 | 15.055172 | 8 |
TAACGCC | 1920 | 0.0 | 14.742187 | 4 |
GTAAACG | 1925 | 0.0 | 14.415584 | 27 |
CGAACGA | 1495 | 0.0 | 14.354514 | 16 |
GACGGAC | 2210 | 0.0 | 14.31448 | 7 |
AAGACGG | 2425 | 0.0 | 14.189691 | 5 |
TAAACGC | 2035 | 0.0 | 14.090909 | 28 |
CTAGTAC | 655 | 0.0 | 13.839695 | 3 |
ATAACGA | 1580 | 0.0 | 13.699367 | 12 |
AACGCCG | 1990 | 0.0 | 13.665829 | 5 |
GTATTAG | 3495 | 0.0 | 13.603719 | 1 |
GGTATCA | 53875 | 0.0 | 13.546636 | 1 |
ACGAACG | 1620 | 0.0 | 13.475308 | 15 |
TATACTG | 2135 | 0.0 | 13.430913 | 5 |
CCGGTCG | 2000 | 0.0 | 13.412499 | 20 |
CGCATCG | 1990 | 0.0 | 13.386934 | 13 |
CGTTTAT | 1980 | 0.0 | 13.174243 | 31 |