Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042372.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8308767 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 42937 | 0.5167674096529605 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32074 | 0.3860259891750485 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 28923 | 0.34810219133597076 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15559 | 0.18726003509305292 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGCGG | 970 | 0.0 | 16.783504 | 29 |
GGTATCA | 18530 | 0.0 | 16.363464 | 1 |
TCTAGCG | 995 | 0.0 | 16.17588 | 28 |
ACGGACC | 1660 | 0.0 | 15.825301 | 8 |
GACGGAC | 1700 | 0.0 | 15.452942 | 7 |
AAGACGG | 1915 | 0.0 | 14.78068 | 5 |
TTAACGG | 340 | 0.0 | 14.147059 | 35 |
GTATTAG | 2295 | 0.0 | 13.542484 | 1 |
TAATACT | 2080 | 0.0 | 13.51923 | 4 |
CGGACCA | 2005 | 0.0 | 13.286784 | 9 |
CGCAAGA | 1990 | 0.0 | 13.201006 | 2 |
AGACGGA | 2050 | 0.0 | 13.085366 | 6 |
CGCAATA | 1290 | 0.0 | 12.906976 | 36 |
GCGAAAG | 1940 | 0.0 | 12.778351 | 18 |
CGTTCGG | 190 | 1.04852006E-7 | 12.657895 | 24 |
GTATAGG | 1535 | 0.0 | 12.534202 | 1 |
TACCGTC | 1270 | 0.0 | 12.527559 | 7 |
TAACGGC | 385 | 0.0 | 12.493506 | 36 |
TTCGGGC | 1170 | 0.0 | 12.333334 | 35 |
GTAAACG | 1080 | 0.0 | 12.333334 | 27 |