Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042365.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10375629 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 50341 | 0.4851850427574077 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 35232 | 0.33956495553185256 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 34074 | 0.3284041863871578 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15699 | 0.15130648946680728 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14530 | 0.0 | 23.7457 | 1 |
GTATCAA | 21655 | 0.0 | 15.907182 | 2 |
TATACTG | 2030 | 0.0 | 15.219212 | 5 |
ACGGACC | 1515 | 0.0 | 13.79868 | 8 |
GACGGAC | 1530 | 0.0 | 13.421569 | 7 |
AAGACGG | 1815 | 0.0 | 13.250689 | 5 |
TCTAGCG | 855 | 0.0 | 12.982456 | 28 |
TCTATAC | 1520 | 0.0 | 12.901316 | 3 |
TAACGCC | 1115 | 0.0 | 12.7757845 | 4 |
GTATTAG | 2450 | 0.0 | 12.761224 | 1 |
TAATACT | 2480 | 0.0 | 12.532257 | 4 |
CGAACGA | 975 | 0.0 | 12.523077 | 16 |
ATCAACG | 27610 | 0.0 | 12.503078 | 4 |
AACGCAG | 27720 | 0.0 | 12.473484 | 7 |
CGCAAGA | 1710 | 0.0 | 12.441521 | 2 |
TCAACGC | 28005 | 0.0 | 12.293698 | 5 |
CAACGCA | 28510 | 0.0 | 12.101894 | 6 |
TATCAAC | 28620 | 0.0 | 12.100629 | 3 |
GTACATG | 32490 | 0.0 | 12.042937 | 1 |
CGGACCA | 1785 | 0.0 | 12.022409 | 9 |