Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042355.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3971820 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 23636 | 0.5950924261421716 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21379 | 0.53826709166075 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 17607 | 0.44329803465413836 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8895 | 0.22395274710334304 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 4356 | 0.10967264377539769 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 4287 | 0.10793540492771575 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAACGG | 210 | 0.0 | 23.785713 | 35 |
CTAACGC | 75 | 9.2751725E-6 | 19.733334 | 3 |
TAACGGC | 245 | 0.0 | 19.632652 | 36 |
TCTAGCG | 565 | 0.0 | 16.699116 | 28 |
TATACTG | 610 | 0.0 | 16.07377 | 5 |
GTACTAG | 265 | 0.0 | 16.056604 | 1 |
AAGACGG | 935 | 0.0 | 16.02674 | 5 |
CTAGCGG | 590 | 0.0 | 15.991526 | 29 |
GACGGAC | 945 | 0.0 | 15.661374 | 7 |
CGCAAGA | 995 | 0.0 | 15.43216 | 2 |
TAATCCG | 85 | 5.368272E-4 | 15.235294 | 5 |
ACGGACC | 985 | 0.0 | 15.213197 | 8 |
TCGAACG | 330 | 0.0 | 15.136364 | 3 |
CGGTCCA | 690 | 0.0 | 14.746376 | 10 |
CGAACGA | 580 | 0.0 | 14.672414 | 16 |
TTTAGCG | 215 | 1.2732926E-11 | 14.627907 | 26 |
GCGCAAG | 1060 | 0.0 | 14.485849 | 1 |
TCGTTTA | 590 | 0.0 | 14.423729 | 30 |
AGACGGA | 1065 | 0.0 | 14.41784 | 6 |
GTATTAG | 1380 | 0.0 | 14.344202 | 1 |