Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042353.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5406864 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 30616 | 0.5662432049335807 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29646 | 0.5483030459060927 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 23200 | 0.4290842159151775 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12318 | 0.22782152463979122 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 9523 | 0.17612797362759633 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 8892 | 0.16445762275507578 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 5831 | 0.1078443992673017 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAACGG | 310 | 0.0 | 19.693548 | 35 |
TAACGGC | 360 | 0.0 | 16.958334 | 36 |
TCGTTTA | 945 | 0.0 | 16.444445 | 30 |
TCTAGCG | 840 | 0.0 | 15.636904 | 28 |
TAACGCC | 1100 | 0.0 | 15.304544 | 4 |
AAGACGG | 1340 | 0.0 | 15.186566 | 5 |
TCGCTAA | 220 | 1.8189894E-12 | 15.136364 | 14 |
ACGGACC | 1250 | 0.0 | 15.095999 | 8 |
CTAGCGG | 870 | 0.0 | 14.885058 | 29 |
GACGGAC | 1275 | 0.0 | 14.800001 | 7 |
GTATTAG | 1880 | 0.0 | 14.760639 | 1 |
ATAACGA | 805 | 0.0 | 14.248447 | 12 |
GTCGTAC | 130 | 4.451009E-6 | 14.230769 | 1 |
CGAACGA | 795 | 0.0 | 14.194968 | 16 |
CGTTTAT | 1095 | 0.0 | 14.191782 | 31 |
TCGCCGG | 1125 | 0.0 | 14.142222 | 17 |
CGCATCG | 1090 | 0.0 | 14.087155 | 13 |
ATTAGAG | 1005 | 0.0 | 13.99005 | 3 |
ATGGTCG | 1085 | 0.0 | 13.981567 | 36 |
CAAGACG | 1645 | 0.0 | 13.832826 | 4 |