Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042339.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3746330 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 32376 | 0.8642057693796329 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29935 | 0.7990486689640262 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 22821 | 0.6091561608293984 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12206 | 0.3258121948680442 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 5517 | 0.1472641224878748 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 4995 | 0.1333304861023989 | No Hit |
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA | 3900 | 0.10410188104091203 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3825 | 0.10209992179012527 | No Hit |
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG | 3784 | 0.10100551739969518 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCGTC | 315 | 0.0 | 19.380953 | 28 |
AAGACGG | 815 | 0.0 | 17.478527 | 5 |
TACGTAG | 315 | 0.0 | 17.031746 | 14 |
ACGGACC | 860 | 0.0 | 16.994186 | 8 |
GTACGTA | 320 | 0.0 | 16.765625 | 13 |
CGTTCGG | 90 | 4.4502718E-5 | 16.444445 | 24 |
TATACTG | 340 | 0.0 | 16.32353 | 5 |
TAGATCG | 80 | 3.3851175E-4 | 16.1875 | 5 |
CTAATCG | 380 | 0.0 | 16.06579 | 26 |
GTCTATA | 185 | 1.8189894E-11 | 16.0 | 1 |
GACGGAC | 885 | 0.0 | 15.887005 | 7 |
GTACTAG | 225 | 0.0 | 15.622222 | 1 |
ATGTACG | 360 | 0.0 | 15.416667 | 11 |
CGCAAGA | 955 | 0.0 | 15.303664 | 2 |
TAACGGC | 305 | 0.0 | 15.163934 | 36 |
AGACGGA | 955 | 0.0 | 15.109947 | 6 |
CGGACCA | 975 | 0.0 | 14.989743 | 9 |
TCGGTAA | 100 | 1.0944115E-4 | 14.8 | 27 |
TACGTCG | 75 | 0.0041067083 | 14.8 | 5 |
TAGACTA | 475 | 0.0 | 14.410526 | 5 |