FastQCFastQC Report
Thu 28 Apr 2016
ERR1042337.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042337.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7068661
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT775101.0965301632091282No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT642410.9088142718967567No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT570030.8064186413805953No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT327730.4636380214017902No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT96070.13590975716617335No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT92280.1305480627802069No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT82580.11682552042034551No Hit
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA80440.11379807293064415No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA73110.10342835793087261No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA72540.10262198173034467No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGACGG16750.017.0089555
ACGGACC15700.016.9681538
TCGTTTA10150.016.4039430
GACGGAC15800.016.3924057
CTAGCGG10550.015.95734729
TCTAGCG10900.015.10550628
CGGACCA18550.014.85983859
AGACGGA17950.014.63509756
GGTATCA376750.014.1812871
GCGCAAG19900.014.1306531
CAAGACG22550.014.1108654
CGTTTAT11800.014.11016931
CGCAAGA19500.013.9461552
CGCAATA12300.013.68699236
GTATAGG15500.013.1290331
CGCATCG13250.013.12452913
TTTAGCG3250.013.09230726
AGTACCG5400.013.01851755
TAACGCC13850.012.9566784
GTATTAG19800.012.8005061