Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042337.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7068661 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 77510 | 1.0965301632091282 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 64241 | 0.9088142718967567 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 57003 | 0.8064186413805953 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32773 | 0.4636380214017902 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9607 | 0.13590975716617335 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9228 | 0.1305480627802069 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8258 | 0.11682552042034551 | No Hit |
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA | 8044 | 0.11379807293064415 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 7311 | 0.10342835793087261 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 7254 | 0.10262198173034467 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 1675 | 0.0 | 17.008955 | 5 |
ACGGACC | 1570 | 0.0 | 16.968153 | 8 |
TCGTTTA | 1015 | 0.0 | 16.40394 | 30 |
GACGGAC | 1580 | 0.0 | 16.392405 | 7 |
CTAGCGG | 1055 | 0.0 | 15.957347 | 29 |
TCTAGCG | 1090 | 0.0 | 15.105506 | 28 |
CGGACCA | 1855 | 0.0 | 14.8598385 | 9 |
AGACGGA | 1795 | 0.0 | 14.6350975 | 6 |
GGTATCA | 37675 | 0.0 | 14.181287 | 1 |
GCGCAAG | 1990 | 0.0 | 14.130653 | 1 |
CAAGACG | 2255 | 0.0 | 14.110865 | 4 |
CGTTTAT | 1180 | 0.0 | 14.110169 | 31 |
CGCAAGA | 1950 | 0.0 | 13.946155 | 2 |
CGCAATA | 1230 | 0.0 | 13.686992 | 36 |
GTATAGG | 1550 | 0.0 | 13.129033 | 1 |
CGCATCG | 1325 | 0.0 | 13.124529 | 13 |
TTTAGCG | 325 | 0.0 | 13.092307 | 26 |
AGTACCG | 540 | 0.0 | 13.0185175 | 5 |
TAACGCC | 1385 | 0.0 | 12.956678 | 4 |
GTATTAG | 1980 | 0.0 | 12.800506 | 1 |