FastQCFastQC Report
Thu 28 Apr 2016
ERR1042331.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042331.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13780365
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT1131410.8210305024576635No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1018520.7391095954279876No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT849550.6164931045004977No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT505860.3670875190896613No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT170130.12345826834049752No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA159410.1156790839720138No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC150100.10892309456244446No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT146670.10643404583260312No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT141540.10271135779059554No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGACGG38500.018.4038945
ACGGACC39700.016.729228
GACGGAC39800.016.5942217
CGCAAGA41250.016.282
AGACGGA43350.015.7474056
TTAACGG8200.015.56707335
TCTAGCG23850.015.51362628
CGGACCA43100.015.495369
CAAGACG49200.015.3790654
CTAGCGG24400.015.01229629
GCGCAAG45600.014.8081151
CGGTCCA27000.014.3203710
GTATTAG48400.014.104341
GGTATCA571450.014.0016611
CGAACGA25550.013.90215216
TAACGGC9200.013.87536
TATACTG19350.013.86304955
TCGTTTA24350.013.52361430
TACGACG28600.013.4545465
GTAAACG26650.013.32833127