Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042331.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13780365 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 113141 | 0.8210305024576635 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 101852 | 0.7391095954279876 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 84955 | 0.6164931045004977 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 50586 | 0.3670875190896613 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17013 | 0.12345826834049752 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 15941 | 0.1156790839720138 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 15010 | 0.10892309456244446 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 14667 | 0.10643404583260312 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14154 | 0.10271135779059554 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 3850 | 0.0 | 18.403894 | 5 |
ACGGACC | 3970 | 0.0 | 16.72922 | 8 |
GACGGAC | 3980 | 0.0 | 16.594221 | 7 |
CGCAAGA | 4125 | 0.0 | 16.28 | 2 |
AGACGGA | 4335 | 0.0 | 15.747405 | 6 |
TTAACGG | 820 | 0.0 | 15.567073 | 35 |
TCTAGCG | 2385 | 0.0 | 15.513626 | 28 |
CGGACCA | 4310 | 0.0 | 15.49536 | 9 |
CAAGACG | 4920 | 0.0 | 15.379065 | 4 |
CTAGCGG | 2440 | 0.0 | 15.012296 | 29 |
GCGCAAG | 4560 | 0.0 | 14.808115 | 1 |
CGGTCCA | 2700 | 0.0 | 14.32037 | 10 |
GTATTAG | 4840 | 0.0 | 14.10434 | 1 |
GGTATCA | 57145 | 0.0 | 14.001661 | 1 |
CGAACGA | 2555 | 0.0 | 13.902152 | 16 |
TAACGGC | 920 | 0.0 | 13.875 | 36 |
TATACTG | 1935 | 0.0 | 13.8630495 | 5 |
TCGTTTA | 2435 | 0.0 | 13.523614 | 30 |
TACGACG | 2860 | 0.0 | 13.454546 | 5 |
GTAAACG | 2665 | 0.0 | 13.328331 | 27 |