Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042330.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6783282 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 67019 | 0.9880025627712367 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 66827 | 0.9851720745208588 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 30058 | 0.4431188324471841 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28034 | 0.4132807688077836 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7853 | 0.11576991786571751 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 7230 | 0.10658557317829334 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 6868 | 0.10124892345622664 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGGAC | 1905 | 0.0 | 15.926509 | 7 |
AAGACGG | 2035 | 0.0 | 15.909091 | 5 |
ACGGACC | 1900 | 0.0 | 15.871053 | 8 |
CGCAAGA | 2005 | 0.0 | 15.685786 | 2 |
CGGACCA | 2000 | 0.0 | 15.077499 | 9 |
GCGCAAG | 2150 | 0.0 | 15.058139 | 1 |
TCGTTTA | 1095 | 0.0 | 14.529681 | 30 |
AGACGGA | 2225 | 0.0 | 13.968539 | 6 |
GGTATCA | 34425 | 0.0 | 13.805809 | 1 |
CAAGACG | 2680 | 0.0 | 13.52985 | 4 |
TACCGTC | 1120 | 0.0 | 13.379464 | 7 |
CGCATCG | 1245 | 0.0 | 13.373494 | 13 |
CGAACGT | 500 | 0.0 | 13.32 | 4 |
GCAAGAC | 3040 | 0.0 | 13.266448 | 3 |
ATGGTCG | 1175 | 0.0 | 13.225533 | 36 |
GCGTTAG | 140 | 9.574524E-6 | 13.214285 | 1 |
TCGAACG | 495 | 0.0 | 13.080809 | 3 |
TAATACT | 1680 | 0.0 | 12.994047 | 4 |
CGAACGA | 1140 | 0.0 | 12.982456 | 16 |
TGGTCGG | 1320 | 0.0 | 12.753788 | 37 |