Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042328.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32308266 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 116459 | 0.3604619325593023 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 94411 | 0.2922193348290496 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 85560 | 0.2648238689132991 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 46440 | 0.1437403047257318 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 41495 | 0.12843462412993628 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 33870 | 0.10483385273601499 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 33798 | 0.1046109995503937 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 44565 | 0.0 | 19.809715 | 1 |
AAGACGG | 10225 | 0.0 | 18.092909 | 5 |
GACGGAC | 9890 | 0.0 | 17.78918 | 7 |
ACGGACC | 9985 | 0.0 | 17.78668 | 8 |
CGCAAGA | 10965 | 0.0 | 16.601913 | 2 |
AGACGGA | 10945 | 0.0 | 16.513933 | 6 |
CGGACCA | 10785 | 0.0 | 16.433008 | 9 |
CAAGACG | 12180 | 0.0 | 16.11535 | 4 |
GCGCAAG | 11845 | 0.0 | 15.634022 | 1 |
TCTAGCG | 5340 | 0.0 | 15.347379 | 28 |
TCGTTTA | 6840 | 0.0 | 14.983918 | 30 |
CTAGCGG | 5640 | 0.0 | 14.662233 | 29 |
TATACTG | 5080 | 0.0 | 14.057087 | 5 |
GCAAGAC | 15485 | 0.0 | 13.798836 | 3 |
CGAACGA | 5460 | 0.0 | 13.790292 | 16 |
GCGAAAG | 12880 | 0.0 | 13.630822 | 18 |
TTAACGG | 1895 | 0.0 | 13.569921 | 35 |
CGAAAGC | 13010 | 0.0 | 13.480399 | 19 |
ACGAACG | 5600 | 0.0 | 13.478571 | 15 |
TACGACG | 7705 | 0.0 | 13.469824 | 5 |