Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042318.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5840552 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 7168 | 0.12272812569770802 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5921 | 0.10137740405358946 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5897 | 0.10096648398986946 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3570 | 0.0 | 20.417368 | 1 |
TTAACGG | 265 | 0.0 | 16.754717 | 35 |
TTAGACT | 780 | 0.0 | 15.416667 | 4 |
TAATACG | 735 | 0.0 | 15.353741 | 4 |
TAACGCC | 500 | 0.0 | 15.17 | 4 |
ATTAGAC | 630 | 0.0 | 14.97619 | 3 |
TATACCG | 360 | 0.0 | 14.902778 | 5 |
TATACTG | 895 | 0.0 | 14.882682 | 5 |
TAACGGC | 325 | 0.0 | 13.661539 | 36 |
TCTAGAC | 570 | 0.0 | 13.631579 | 3 |
CTAACGC | 150 | 1.3079971E-6 | 13.566667 | 3 |
GTACTAG | 425 | 0.0 | 13.494117 | 1 |
TCTATAC | 735 | 0.0 | 13.340136 | 3 |
TATTAGA | 1170 | 0.0 | 13.282051 | 2 |
ATTAGAG | 870 | 0.0 | 13.183908 | 3 |
GTATTAG | 1565 | 0.0 | 13.121406 | 1 |
AATAACG | 480 | 0.0 | 13.104166 | 2 |
ATACGCC | 615 | 0.0 | 12.934959 | 6 |
TTATACC | 1215 | 0.0 | 12.790124 | 4 |
ATAATAC | 1215 | 0.0 | 12.485597 | 3 |