Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042317.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5146882 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 21521 | 0.41813665050024457 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18315 | 0.3558465105669802 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 17252 | 0.3351932296096938 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8334 | 0.16192327704423765 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAACGG | 515 | 0.0 | 17.961164 | 35 |
TTAGACT | 570 | 0.0 | 17.850876 | 4 |
GGTATCA | 9550 | 0.0 | 17.628273 | 1 |
ATTAGAC | 530 | 0.0 | 16.40566 | 3 |
TAACGGC | 560 | 0.0 | 16.1875 | 36 |
TGCGACG | 275 | 0.0 | 16.145454 | 22 |
ACGTTTA | 410 | 0.0 | 15.792682 | 26 |
TAGGTCG | 355 | 0.0 | 15.633802 | 21 |
GTACTAG | 350 | 0.0 | 15.328572 | 1 |
CTAGTAC | 435 | 0.0 | 14.885058 | 3 |
TCTATAC | 755 | 0.0 | 14.701987 | 3 |
TCGCTAA | 815 | 0.0 | 14.527607 | 14 |
TCTATCG | 450 | 0.0 | 14.388889 | 31 |
TATTAGA | 1455 | 0.0 | 14.24055 | 2 |
GTATTAG | 2170 | 0.0 | 14.237328 | 1 |
CTCGCTA | 840 | 0.0 | 14.095239 | 13 |
CGTCGTA | 290 | 0.0 | 14.034483 | 10 |
TTTAGCG | 675 | 0.0 | 13.9777775 | 26 |
TAATACG | 915 | 0.0 | 13.95082 | 4 |
CGTAGCG | 525 | 0.0 | 13.742858 | 15 |