Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042316.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15874128 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 56332 | 0.35486673661696566 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 47910 | 0.30181185385427156 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 43533 | 0.2742386857407223 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24656 | 0.1553219175251705 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 25810 | 0.0 | 16.779737 | 1 |
TCTAGCG | 2025 | 0.0 | 15.622221 | 28 |
ACGGACC | 2810 | 0.0 | 14.088968 | 8 |
CTAGCGG | 2260 | 0.0 | 13.9977865 | 29 |
CGAACGA | 1815 | 0.0 | 13.964187 | 16 |
GACGGAC | 2790 | 0.0 | 13.858422 | 7 |
GTATTAG | 4700 | 0.0 | 13.815957 | 1 |
TATACTG | 2715 | 0.0 | 13.696133 | 5 |
TTAGACT | 1745 | 0.0 | 13.25215 | 4 |
TCGTTTA | 1860 | 0.0 | 13.228495 | 30 |
TTAACGG | 715 | 0.0 | 13.195805 | 35 |
TATTAGA | 2580 | 0.0 | 13.050387 | 2 |
AAGACGG | 3455 | 0.0 | 13.011577 | 5 |
CGCAATA | 2550 | 0.0 | 12.913726 | 36 |
CGAGCCG | 3655 | 0.0 | 12.85636 | 15 |
GTCCTAT | 3000 | 0.0 | 12.579999 | 1 |
TAATACT | 3645 | 0.0 | 12.53635 | 4 |
ATTAGAG | 2700 | 0.0 | 12.401852 | 3 |
TAACGAA | 2045 | 0.0 | 12.393644 | 13 |
GTAAACG | 2485 | 0.0 | 12.35815 | 27 |