Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042310.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1682263 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2474 | 0.1470638063132816 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2100 | 0.12483184852784612 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 1924 | 0.11436975074646473 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 1794 | 0.10664206488521712 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 1790 | 0.10640428993564026 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTTTA | 65 | 6.904561E-5 | 19.923077 | 13 |
GTCTATA | 60 | 9.2392444E-4 | 18.5 | 1 |
TGCGACG | 120 | 5.178663E-9 | 18.5 | 22 |
CGTTATT | 185 | 0.0 | 18.0 | 2 |
ATTAGAC | 165 | 3.6379788E-12 | 17.939394 | 3 |
AATGCGA | 145 | 1.546141E-10 | 17.862068 | 20 |
GTTATAC | 85 | 2.7243314E-5 | 17.411764 | 3 |
TAGGTCG | 160 | 3.45608E-11 | 17.34375 | 21 |
TCTAACG | 75 | 2.0679848E-4 | 17.266666 | 2 |
TTAGACT | 195 | 0.0 | 17.076923 | 4 |
GTTATTC | 195 | 0.0 | 17.076923 | 3 |
GTTTCGC | 110 | 7.812887E-7 | 16.818182 | 32 |
GTACTAG | 155 | 4.0199666E-10 | 16.709679 | 1 |
TAGACTA | 245 | 0.0 | 16.612246 | 5 |
CGACATT | 90 | 4.4479297E-5 | 16.444445 | 28 |
CTAGTAC | 240 | 0.0 | 16.1875 | 3 |
TTACGGT | 70 | 0.0025931636 | 15.857142 | 4 |
ACGCTAT | 95 | 7.062789E-5 | 15.578946 | 10 |
TATACTG | 180 | 2.0190782E-10 | 15.416666 | 5 |
ACTCTAA | 195 | 4.1836756E-11 | 15.179487 | 10 |