FastQCFastQC Report
Thu 28 Apr 2016
ERR1042310.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042310.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1682263
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT24740.1470638063132816No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT21000.12483184852784612No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT19240.11436975074646473No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC17940.10664206488521712No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA17900.10640428993564026No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTTTA656.904561E-519.92307713
GTCTATA609.2392444E-418.51
TGCGACG1205.178663E-918.522
CGTTATT1850.018.02
ATTAGAC1653.6379788E-1217.9393943
AATGCGA1451.546141E-1017.86206820
GTTATAC852.7243314E-517.4117643
TAGGTCG1603.45608E-1117.3437521
TCTAACG752.0679848E-417.2666662
TTAGACT1950.017.0769234
GTTATTC1950.017.0769233
GTTTCGC1107.812887E-716.81818232
GTACTAG1554.0199666E-1016.7096791
TAGACTA2450.016.6122465
CGACATT904.4479297E-516.44444528
CTAGTAC2400.016.18753
TTACGGT700.002593163615.8571424
ACGCTAT957.062789E-515.57894610
TATACTG1802.0190782E-1015.4166665
ACTCTAA1954.1836756E-1115.17948710