FastQCFastQC Report
Thu 28 Apr 2016
ERR1042306.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042306.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8354213
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA42450.019.0011791
TCTAGCG13250.015.49811328
TTAGAGT9600.014.8385424
ACGGACC19250.014.5116878
TTAGACT7050.014.4326254
GTACTAG4550.013.8241751
ATTAGAC5900.013.7966113
TATACTG9000.013.5666675
CTAGCGG15400.013.45454729
GTCCTAT16950.013.4247781
TCGTTTA13800.013.40579630
ATTAGAG10950.013.3470323
TAGACTA5700.013.3070175
TAACGCC16200.013.2469144
AAGACGG22550.013.1263865
GTATTAT9600.013.1041671
GACGGAC20950.013.0692127
TAACGAA13950.012.99641513
GTATCAA62200.012.8191332
CGTTATT11900.012.74792
Produced by FastQC (version 0.11.5)