FastQCFastQC Report
Thu 28 Apr 2016
ERR1042295.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042295.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8289155
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT547300.6602603039754956No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT489160.5901204646311958No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT331360.39975124123025807No Hit
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG203730.24577897264558332No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT196810.23743071519352696No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC177470.21409902456884933No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC137470.16584320114655837No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTT131830.15903913004401535No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTG128620.1551666002143765No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTC125290.15114930291447076No Hit
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG120390.14523796454524013No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG119400.14404363291553843No Hit
GTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGT117470.1417152894354129No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG115680.13955584133726537No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAA111720.13477851481845857No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGAC94980.11458345271622983No Hit
CCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTC94300.11376310371805087No Hit
GTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCG91520.11040932399020166No Hit
CTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAG90000.1085756027001546No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGA87560.10563199747139485No Hit
GTTTAGGACCTGTGGGTTTGTTAGGTACTGTTTGCATTAATAA87500.10555961373626141No Hit
CCATAGGGTCTTCTCGTCTTGCTGTGTTATGCCCGCCTCTTCA83800.1010959500696995No Hit
GTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATT83150.10031179293908729No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAGTT16000.018.26875113
GCCGAGT16200.017.92901212
TTAACGG40000.016.1412535
CTACGCT3250.015.93846130
TAACGGC40300.015.92927936
GTAAGAT19800.015.8838393
GGGTAAG20700.015.7294691
ATTAGAG45000.015.6222233
TATTAGA51000.015.525492
CTCTAAT49400.015.5040481
TTGCCGA19150.015.45691910
AACGGCC42350.015.37662437
CGTATTA7000.015.32857215
GGGGTTA34350.015.1877736
GTGACAC44300.015.15914224
GTATTAG57550.015.1086011
CACATGT45800.015.026228
TTTAACG44500.014.92471934
GACACAT45850.014.88876726
TGCCGAG20100.014.81840711