FastQCFastQC Report
Thu 28 Apr 2016
ERR1042289.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042289.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11348571
Sequences flagged as poor quality0
Sequence length43
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT2488182.1925051180452586No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT1744991.53762971567081No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT1169281.0303323651938205No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT821080.7235095942916514No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG462390.4074433688611544No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG264410.23298968654291366No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG245390.21622986717887213No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA242960.21408862842731477No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT222010.1956281544169746No Hit
GTACGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA203700.17949396448240046No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT193010.17007427631196914No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT184470.1625490997941503No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT181680.16009064048680666No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG170260.15002769952269762No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT164810.14522533277537764No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT157160.13848439596491927No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA156810.13817598709123818No Hit
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGT141890.1250289573903181No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG132160.11645519070198353No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT128400.113141998230438No Hit
GAGTACGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA127090.11198766787466016No Hit
GAGTACGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA119150.10499119228315178No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGACG22300.023.72645823
CGTAGAG22500.023.2688928
GAGACGT22850.022.99343524
ATCTCGT23550.022.0743137
CCCACGA24550.021.55193519
ATCTCCG25750.020.9786410
AGACGTA25000.020.94225
GACGTAG25550.020.63600726
CGAGCCC26300.020.46958215
ACGAGAC26050.020.45297422
ACGTAGA25600.020.3066427
TCTCCGA26600.020.03007511
TATACAC31400.019.3837593
GCCCACG29000.018.518
AATCTCG29700.017.81481636
TACACAT36050.017.2427185
GGAATCT32350.016.92735734
GAATCTC31800.016.87106935
CACGAGA32250.016.63565821
ACATCTC36350.015.9807438