Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042287.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10627708 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 131562 | 1.2379150800906462 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 95510 | 0.8986885977672702 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 69135 | 0.6505165554040439 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 54436 | 0.5122082767046291 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 45789 | 0.43084548427563124 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 31639 | 0.2977029478039856 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 29500 | 0.2775763127854096 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 21646 | 0.20367514801874495 | No Hit |
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG | 16911 | 0.15912179747505295 | No Hit |
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA | 15681 | 0.14754827663688164 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 14122 | 0.13287907420866288 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12227 | 0.11504832462465096 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA | 11553 | 0.10870641157999447 | No Hit |
ACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGA | 11194 | 0.10532844899389408 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 11080 | 0.10425578120889284 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCTCGT | 1150 | 0.0 | 16.730434 | 37 |
GTCGGGA | 1040 | 0.0 | 16.009615 | 2 |
TTAACGG | 2340 | 0.0 | 15.495727 | 35 |
AATACTG | 3505 | 0.0 | 14.620543 | 5 |
GGTAAAC | 2780 | 0.0 | 14.573742 | 35 |
TAACGGC | 2460 | 0.0 | 14.514228 | 36 |
TAATACT | 4405 | 0.0 | 14.405222 | 4 |
GTATTAG | 5025 | 0.0 | 14.321394 | 1 |
ATACTGG | 3510 | 0.0 | 14.125357 | 6 |
GAGACCG | 1350 | 0.0 | 14.114816 | 24 |
CCCACGA | 1450 | 0.0 | 14.034483 | 19 |
AGACCGA | 1330 | 0.0 | 13.770678 | 25 |
CCGAGTT | 945 | 0.0 | 13.703704 | 13 |
TACTGGT | 3365 | 0.0 | 13.579495 | 7 |
TTGGTAA | 3095 | 0.0 | 13.449112 | 33 |
CCGTCGT | 390 | 0.0 | 13.28205 | 9 |
GACCGAG | 1465 | 0.0 | 13.259386 | 26 |
TAGGACC | 2750 | 0.0 | 13.185455 | 4 |
ATCTCCG | 1460 | 0.0 | 13.178082 | 10 |
TATTAGA | 3680 | 0.0 | 13.171196 | 2 |