FastQCFastQC Report
Thu 28 Apr 2016
ERR1042261.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042261.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4458184
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG119330.26766504029443383No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG118040.2647714854299419No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT105160.23588079810075133No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG103860.23296481257839516No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG78100.17518343792001406No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG63220.14180661901796787No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA57860.12978378640271465No Hit
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG56410.1265313410123943No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT54570.12240409996536707No Hit
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA54520.12229194667604568No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT53870.12083395391486756No Hit
GGTATCAACGCAGAGTACGGAAGCAGTGGTATCAACGCAGAGT53860.1208115232570033No Hit
ACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGA51750.11607865444764057No Hit
TATCAACGCAGAGTACGGAAGCAGTGGTATCAACGCAGAGTAC49850.11181682945342766No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG49030.10997751550855683No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC48450.1086765373524287No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG47110.1056708291986154No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT46840.1050652014362799No Hit
AGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAAT44700.10026504065332431No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGTAT555.146287E-420.18181812
CCGAGTT6550.016.3816813
GGGTAAG8400.016.2976191
GTAAGAT8950.014.46927453
AGGTCGC13200.013.87535
CGAACTA17950.013.81058524
GCTCCGA14350.013.53658529
CGAGTTC8250.013.45454614
TATACAC6300.013.2142853
GCGAACT19200.013.200520523
TATACTG3650.013.1780825
CCTATAG5850.012.96581210
ATACCGT3150.012.9206346
GCCGAGT8750.012.89714312
TGCCGAG8350.012.85029911
CGTCCTA1451.3739611E-512.7586233
TGCTCGG16250.012.63692310
TTGCCGA9450.012.529110
CGCGTAA1050.002645628312.33333310
TTTGCCG9200.012.2663059