Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042261.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4458184 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG | 11933 | 0.26766504029443383 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 11804 | 0.2647714854299419 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 10516 | 0.23588079810075133 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 10386 | 0.23296481257839516 | No Hit |
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG | 7810 | 0.17518343792001406 | No Hit |
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG | 6322 | 0.14180661901796787 | No Hit |
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA | 5786 | 0.12978378640271465 | No Hit |
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG | 5641 | 0.1265313410123943 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 5457 | 0.12240409996536707 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA | 5452 | 0.12229194667604568 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5387 | 0.12083395391486756 | No Hit |
GGTATCAACGCAGAGTACGGAAGCAGTGGTATCAACGCAGAGT | 5386 | 0.1208115232570033 | No Hit |
ACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGA | 5175 | 0.11607865444764057 | No Hit |
TATCAACGCAGAGTACGGAAGCAGTGGTATCAACGCAGAGTAC | 4985 | 0.11181682945342766 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 4903 | 0.10997751550855683 | No Hit |
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC | 4845 | 0.1086765373524287 | No Hit |
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG | 4711 | 0.1056708291986154 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 4684 | 0.1050652014362799 | No Hit |
AGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAAT | 4470 | 0.10026504065332431 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGTAT | 55 | 5.146287E-4 | 20.181818 | 12 |
CCGAGTT | 655 | 0.0 | 16.38168 | 13 |
GGGTAAG | 840 | 0.0 | 16.297619 | 1 |
GTAAGAT | 895 | 0.0 | 14.4692745 | 3 |
AGGTCGC | 1320 | 0.0 | 13.875 | 35 |
CGAACTA | 1795 | 0.0 | 13.810585 | 24 |
GCTCCGA | 1435 | 0.0 | 13.536585 | 29 |
CGAGTTC | 825 | 0.0 | 13.454546 | 14 |
TATACAC | 630 | 0.0 | 13.214285 | 3 |
GCGAACT | 1920 | 0.0 | 13.2005205 | 23 |
TATACTG | 365 | 0.0 | 13.178082 | 5 |
CCTATAG | 585 | 0.0 | 12.965812 | 10 |
ATACCGT | 315 | 0.0 | 12.920634 | 6 |
GCCGAGT | 875 | 0.0 | 12.897143 | 12 |
TGCCGAG | 835 | 0.0 | 12.850299 | 11 |
CGTCCTA | 145 | 1.3739611E-5 | 12.75862 | 33 |
TGCTCGG | 1625 | 0.0 | 12.636923 | 10 |
TTGCCGA | 945 | 0.0 | 12.5291 | 10 |
CGCGTAA | 105 | 0.0026456283 | 12.333333 | 10 |
TTTGCCG | 920 | 0.0 | 12.266305 | 9 |