Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042258.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1310675 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 53 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 2804 | 0.21393556755107102 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 2575 | 0.19646365422396855 | No Hit |
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG | 1901 | 0.14503976958437445 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 1895 | 0.14458199019589144 | No Hit |
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG | 1833 | 0.13985160318156675 | No Hit |
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT | 1791 | 0.13664714746218554 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 1614 | 0.12314265550193602 | No Hit |
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC | 1524 | 0.11627596467469051 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 1498 | 0.11429225399126404 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCCCG | 55 | 5.1436224E-4 | 20.181818 | 5 |
TTATAGA | 50 | 0.0070353956 | 18.5 | 4 |
TAACCCG | 70 | 1.2193629E-4 | 18.5 | 28 |
GTATACT | 70 | 1.2193629E-4 | 18.5 | 4 |
CGTTATT | 65 | 0.001580094 | 17.076923 | 2 |
CTATACC | 215 | 0.0 | 16.348837 | 4 |
CCCCTAT | 170 | 8.54925E-11 | 16.32353 | 1 |
GCCTTAA | 70 | 0.0025927539 | 15.857142 | 1 |
ATTAGAG | 460 | 0.0 | 15.684781 | 3 |
TAGTACG | 130 | 2.589568E-7 | 15.653846 | 4 |
AACCCGT | 95 | 7.060883E-5 | 15.578948 | 29 |
CTAGCAT | 335 | 0.0 | 15.462687 | 4 |
CCTCTAG | 455 | 0.0 | 15.45055 | 1 |
TTTAAAC | 120 | 1.9359068E-6 | 15.416666 | 3 |
TAGGATA | 85 | 5.3648645E-4 | 15.235294 | 4 |
TATACTG | 85 | 5.3648645E-4 | 15.235294 | 5 |
ACTGCGT | 110 | 1.4520978E-5 | 15.136364 | 8 |
ACCAGTA | 330 | 0.0 | 15.136364 | 12 |
TACACTC | 160 | 1.0966687E-8 | 15.03125 | 5 |
GTCTAAA | 100 | 1.0935495E-4 | 14.8 | 1 |