FastQCFastQC Report
Thu 28 Apr 2016
ERR1042256.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042256.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1966362
Sequences flagged as poor quality0
Sequence length43
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT163720.8326035592632486No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT149620.7608975356521333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT110730.5631211343587803No Hit
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG83500.42464205471830724No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT71370.36295453227839025No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC68280.34724023348701816No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC49830.2534121387618353No Hit
GTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGT49810.2533104280900465No Hit
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG49170.25005568659280436No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG46590.23693500993204708No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG44580.2267130874172711No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAA43900.22325492457645132No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTC43580.22162755382783028No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT42270.21496550482566282No Hit
CTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAG38440.19548791117810455No Hit
GATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGATCAC36560.18592710802995582No Hit
GTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTC36120.18368947325060186No Hit
GTTTAGGACCTGTGGGTTTGTTAGGTACTGTTTGCATTAATAA34410.1749932108126581No Hit
GTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATT34040.173111563384565No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGT33850.17214531200257124No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGG33770.171738469315416No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTG33220.16894142584122354No Hit
CCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTC33100.16833116181049065No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACAT33050.1680768851310186No Hit
GTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCG32640.16599181635934787No Hit
GTATAGTAGTTCGCTTTGACTGGTGAAGTCTTAGCATGTACTG31260.15897378000591958No Hit
GTTATATGTTTGGGATTTTTTAGGTAGTGGGTGTTGAGCTTGA30510.15515962981383896No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCAT30470.15495620847026131No Hit
GTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCG29120.14809073812451626No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGAC28720.14605652468873992No Hit
GTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATG28710.1460056693528455No Hit
GGCTTATGCGGAGGAGAATGTTTTCATGTTACTTATACTAACA28700.1459548140169511No Hit
CCATAGGGTCTTCTCGTCTTGCTGTGTTATGCCCGCCTCTTCA28430.14458171994780208No Hit
ACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTT28170.14325948121454746No Hit
GATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAG28040.14259836184792016No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG27600.1403607270685662No Hit
GGGTAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTT27590.1403098717326718No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGA27500.13985217370962214No Hit
ATCCTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTC27320.1389367776635228No Hit
GGGTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCC27060.13761453893026818No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26840.1364957215405912No Hit
CCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAAT26840.1364957215405912No Hit
GCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAAC26820.1363940108688024No Hit
ACCCTATGGAGCTTTAATTTATTAATGCAAACAGTACCTAACA25870.13156275395883363No Hit
ATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGT25810.13125762194346718No Hit
ATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCA25470.1295285405230573No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACAT25260.12846057846927472No Hit
GTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGAT24980.12703662906423133No Hit
GAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTG24950.12688406305654806No Hit
TCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCA24900.12662978637707603No Hit
GTGTTATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTT24810.12617208835402638No Hit
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT24810.12617208835402638No Hit
ACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGG24800.12612123301813197No Hit
GCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGA24390.12403616424646123No Hit
TTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGA24210.1231207682003619No Hit
CTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAA24180.12296820219267868No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTT24100.1225613595055234No Hit
CCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGG24100.1225613595055234No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG23790.12098484409279675No Hit
CTCTAGAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTC23360.1187980646493372No Hit
AGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAAT23340.1186963539775484No Hit
ATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACC23280.11839122196218192No Hit
ATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAAC23020.11706898322892732No Hit
GCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTT22780.11584845516746153No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22750.1156958891597783No Hit
ATTGAGTATAGTAGTTCGCTTTGACTGGTGAAGTCTTAGCATG22530.11457707177010133No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22430.11406851841115725No Hit
CTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTG22420.11401766307526284No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22250.11315312236505791No Hit
ACTATGGGTGTTAAATTTTTTACTCTCTCTACAAGGTTTTTTC22130.11254285833432502No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG21930.11152575161643685No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG21880.1112714749369648No Hit
TGCTAGAGGTGATGTTTTTGGTAAACAGGCGGGGGAAGATTTG21730.1105086448985487No Hit
GTTCTGCTCCGAGGTCGCCCCAACCGAAATTTTTAATGCAGGT21680.11025436821907664No Hit
CGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCG21540.10954239351655495No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCA21370.10867785280635No Hit
GTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAA21360.1086269974704556No Hit
CTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCAT21230.1079658781038283No Hit
GTCCTGATCCAACATCGAGGTCGTAAACCCTATTGTTGATATG21140.1075081800807786No Hit
CTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTC20780.10567738798857992No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCAT20430.10389745123227564No Hit
CTCTACAAGGTTTTTTCCTAGTGTCCAAAGAGCTGTTCCTCTT20160.10252435716312663No Hit
ACCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAA20070.10206665914007694No Hit
ATTGTAGATATTGGGCTGTTAATTGTCAGTTCAGTGTTTTAAT19950.10145639510934405No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT4150.030.31325337
CATCTCG4450.029.10112236
CTACATC4950.026.53535533
TACATCT5150.025.50485234
CCCACGA5250.025.01904919
CGAGCCC5350.024.55140115
ACGAGAC5400.024.32407422
ATCTCCG5600.024.1160710
TCTCCGA5650.023.57522211
GCCCACG5650.023.24778718
GAGACCT5650.023.24778724
TCTACAT5850.022.45299132
ACCTCTC6400.021.10156227
CACGAGA6450.020.36434221
ACACATC7350.020.1360556
GCGCTAT656.905321E-519.92307719
TATACAC6900.019.840583
TGCCGAG6900.019.8405811
AGCCCAC6850.019.17518217
CCGAGTT7350.019.12925113