Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042251.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12719427 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 37933 | 0.29822884317037235 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 36675 | 0.2883384605297078 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 25979 | 0.20424662211591765 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18586 | 0.14612293462590728 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGGAC | 2275 | 0.0 | 16.58901 | 7 |
ACGGACC | 2310 | 0.0 | 16.577923 | 8 |
TTAACGG | 1140 | 0.0 | 16.22807 | 35 |
AAGACGG | 2430 | 0.0 | 16.139917 | 5 |
TAACGGC | 1160 | 0.0 | 15.629312 | 36 |
GTATTAG | 4080 | 0.0 | 15.416667 | 1 |
CGCAAGA | 2720 | 0.0 | 14.691176 | 2 |
CGGACCA | 2605 | 0.0 | 14.558542 | 9 |
TCTAGCG | 1300 | 0.0 | 14.515386 | 28 |
AGACGGA | 2755 | 0.0 | 14.504537 | 6 |
CGAACGA | 1265 | 0.0 | 14.332016 | 16 |
CTAGCGG | 1330 | 0.0 | 14.327067 | 29 |
TATACTG | 2335 | 0.0 | 14.261243 | 5 |
TTTAGCG | 825 | 0.0 | 14.127274 | 26 |
CGTCGTA | 1565 | 0.0 | 13.948882 | 10 |
TAACGCC | 1700 | 0.0 | 13.929411 | 4 |
CCGTCGT | 1650 | 0.0 | 13.566668 | 9 |
TACCGTC | 1775 | 0.0 | 13.549295 | 7 |
ACCGTCG | 1710 | 0.0 | 13.523392 | 8 |
ATACCGT | 1990 | 0.0 | 13.479899 | 6 |