Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042247.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3643536 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 10194 | 0.27978315570369006 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6932 | 0.19025474154777117 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 6439 | 0.17672392972101825 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3075 | 0.0 | 25.20813 | 1 |
TAGACCG | 85 | 2.7257423E-5 | 17.411764 | 5 |
GACGGAC | 325 | 0.0 | 16.507692 | 7 |
GTATCAA | 4640 | 0.0 | 16.426725 | 2 |
TAACGGC | 225 | 0.0 | 15.622221 | 36 |
TTAACGG | 215 | 0.0 | 15.488372 | 35 |
TCTATAC | 600 | 0.0 | 15.416667 | 3 |
TTAGCGA | 120 | 1.9382096E-6 | 15.416666 | 27 |
ACGGACC | 400 | 0.0 | 15.262501 | 8 |
TAATACT | 985 | 0.0 | 15.213197 | 4 |
ATTAGAC | 365 | 0.0 | 14.698631 | 3 |
TATACTG | 805 | 0.0 | 14.478261 | 5 |
CGACTTA | 90 | 8.2800904E-4 | 14.388889 | 10 |
GTATAGG | 775 | 0.0 | 14.322579 | 1 |
TCTAGCG | 210 | 1.364242E-10 | 14.095238 | 28 |
CTAGCGT | 80 | 0.0063020797 | 13.875001 | 4 |
TCACGTA | 280 | 0.0 | 13.875 | 25 |
CTAATAC | 1040 | 0.0 | 13.697114 | 3 |
TAATACG | 340 | 0.0 | 13.6029415 | 4 |
TTAGACT | 450 | 0.0 | 13.566666 | 4 |