Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042241.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4867248 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 66299 | 1.3621455080982108 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 54012 | 1.109703060127612 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 32718 | 0.6722073746807231 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30795 | 0.6326983954793346 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 8010 | 0.16456938294494136 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 7453 | 0.1531255444555116 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7302 | 0.15002317531385292 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6589 | 0.13537424022774266 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6572 | 0.1350249668806685 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5461 | 0.11219892637482208 | No Hit |
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA | 5264 | 0.10815146464696272 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4896 | 0.10059072395735742 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGGAC | 600 | 0.0 | 16.65 | 7 |
TATACCG | 270 | 0.0 | 15.759259 | 5 |
TTAGCGA | 95 | 7.06718E-5 | 15.578948 | 27 |
TATACTG | 700 | 0.0 | 15.328571 | 5 |
ACGGACC | 675 | 0.0 | 14.525926 | 8 |
AAGACGG | 830 | 0.0 | 14.487952 | 5 |
GTATTAG | 870 | 0.0 | 14.45977 | 1 |
GAACAGT | 3010 | 0.0 | 14.382061 | 1 |
GTACTAG | 395 | 0.0 | 14.050632 | 1 |
AGACGGA | 795 | 0.0 | 13.729561 | 6 |
GGTATCA | 26745 | 0.0 | 13.502337 | 1 |
ACGAACG | 345 | 0.0 | 13.405797 | 15 |
ATACCGA | 335 | 0.0 | 13.253732 | 6 |
CGGTATA | 210 | 2.046363E-9 | 13.214287 | 26 |
AACAGTG | 3235 | 0.0 | 13.153014 | 2 |
CGACGGT | 410 | 0.0 | 13.085365 | 7 |
CCGATAA | 385 | 0.0 | 12.974026 | 9 |
CGGACCA | 815 | 0.0 | 12.93865 | 9 |
CGCAAGA | 880 | 0.0 | 12.823864 | 2 |
CCTATAC | 420 | 0.0 | 12.77381 | 3 |