FastQCFastQC Report
Thu 28 Apr 2016
ERR1042239.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042239.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2757060
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA12500.022.0521
GTATTAG3650.016.7260271
GTATCAA17100.015.9035092
TAATAGT2750.015.4727284
TCTATAC2109.094947E-1214.976193
TATACTG3350.014.9104475
GAGTATA1508.113784E-814.81
CTAACGC1001.09424494E-414.83
TAGCACT3850.014.4155844
TCGTTTA1551.2119926E-714.3225830
GTAGCAC3000.014.1833333
ATTAGAC1702.44072E-814.1470593
TCGCTAA1203.3036515E-513.87500114
TAACGCC2950.013.796614
TATTAGG3000.013.5666672
GCATAAG2355.638867E-1113.38297751
GTATAAG2501.0913936E-1113.321
GTGTAAG4450.013.303371
TACACTC3350.013.2537315
TATACAG2703.6379788E-1213.0185185
Produced by FastQC (version 0.11.5)