Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042237.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4518890 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 87418 | 1.9345016143344935 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 70242 | 1.5544082728280617 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 34424 | 0.7617799946447026 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28905 | 0.6396482321986151 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 7956 | 0.17606093531818656 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6228 | 0.13782145615405553 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 5247 | 0.116112585170252 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 5191 | 0.11487334278993293 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4739 | 0.1048708864345005 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 4637 | 0.10261369495606222 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4609 | 0.10199407376590269 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4571 | 0.10115315929354333 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4563 | 0.10097612466778347 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 1085 | 0.0 | 22.1659 | 5 |
ACGGACC | 1180 | 0.0 | 20.538136 | 8 |
CGCAAGA | 1155 | 0.0 | 20.341991 | 2 |
GACGGAC | 1210 | 0.0 | 20.181818 | 7 |
CGGACCA | 1250 | 0.0 | 19.388 | 9 |
AGACGGA | 1275 | 0.0 | 19.298038 | 6 |
GCGCAAG | 1290 | 0.0 | 19.073645 | 1 |
TCGAACG | 295 | 0.0 | 18.186441 | 3 |
GGTATCA | 28005 | 0.0 | 17.882343 | 1 |
CAAGACG | 1450 | 0.0 | 17.862068 | 4 |
TACGACG | 580 | 0.0 | 17.224138 | 5 |
CGAACGT | 315 | 0.0 | 17.031746 | 4 |
GTACTAG | 250 | 0.0 | 17.02 | 1 |
ACACGCT | 1500 | 0.0 | 16.033333 | 9 |
GTCGGGA | 260 | 0.0 | 15.653846 | 2 |
TATACTG | 625 | 0.0 | 15.392 | 5 |
TTAGCGA | 145 | 5.35656E-8 | 15.310345 | 27 |
GTACCGT | 85 | 5.3684757E-4 | 15.235293 | 6 |
TAACGAA | 685 | 0.0 | 15.124087 | 13 |
GACCGTG | 630 | 0.0 | 14.97619 | 7 |