Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042231.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1063587 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8871 | 0.8340643501659948 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7148 | 0.6720653787607408 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4633 | 0.43560141295446453 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 2314 | 0.21756565283328963 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 2014 | 0.18935921556017515 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1292 | 0.12147572318954633 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGACC | 465 | 0.0 | 27.451612 | 8 |
GACGGAC | 475 | 0.0 | 26.484211 | 7 |
AGACGGA | 535 | 0.0 | 24.897196 | 6 |
CGGACCA | 535 | 0.0 | 24.551401 | 9 |
GGTATCA | 2365 | 0.0 | 24.171247 | 1 |
AAGACGG | 555 | 0.0 | 24.0 | 5 |
CAAGACG | 560 | 0.0 | 23.455359 | 4 |
CGCAAGA | 610 | 0.0 | 22.139345 | 2 |
GCGAAAG | 585 | 0.0 | 22.136751 | 18 |
CAGAGCG | 580 | 0.0 | 22.008621 | 14 |
GCGCAAG | 610 | 0.0 | 21.836065 | 1 |
GTAATAC | 170 | 0.0 | 21.764706 | 3 |
CGAAAGC | 575 | 0.0 | 21.556522 | 19 |
TCGCGTA | 215 | 0.0 | 21.511627 | 9 |
AGCGAAA | 595 | 0.0 | 21.453783 | 17 |
GTATCAA | 2775 | 0.0 | 20.6 | 2 |
AACCGTT | 45 | 0.0038256226 | 20.555557 | 7 |
GAGCGAA | 625 | 0.0 | 20.128 | 16 |
GTCGCGT | 230 | 0.0 | 20.108696 | 8 |
CGCGTAA | 235 | 0.0 | 19.680851 | 10 |