Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042230.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 222288 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2083 | 0.9370726265025553 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1482 | 0.66670265601382 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 689 | 0.30995825235730223 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 514 | 0.23123155545958393 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTAGC | 20 | 0.0018387433 | 37.0 | 9 |
TGCCTCG | 40 | 1.5923906E-6 | 32.375 | 10 |
AGCTAGC | 35 | 2.3797114E-5 | 31.714287 | 35 |
GGTATCA | 380 | 0.0 | 30.184212 | 1 |
TATACAT | 65 | 2.9631337E-9 | 28.46154 | 5 |
CTCGCCG | 40 | 5.9189202E-5 | 27.750002 | 13 |
GCTAGCA | 45 | 1.3185259E-4 | 24.666668 | 36 |
GTATCAA | 500 | 0.0 | 23.68 | 2 |
TCGCCGC | 55 | 1.8937219E-5 | 23.545454 | 14 |
TAATACC | 55 | 1.8937219E-5 | 23.545454 | 4 |
AGTACTG | 55 | 1.8937219E-5 | 23.545454 | 5 |
TTAATAC | 40 | 0.0019263157 | 23.125002 | 3 |
CTACAGT | 80 | 2.7008355E-8 | 23.125002 | 4 |
GAGCTAG | 50 | 2.69261E-4 | 22.2 | 34 |
AAGACTT | 50 | 2.69261E-4 | 22.2 | 5 |
GGCCCCA | 50 | 2.69261E-4 | 22.2 | 24 |
AGTGCCT | 60 | 3.7089074E-5 | 21.583332 | 8 |
ACTAACA | 60 | 3.7089074E-5 | 21.583332 | 11 |
ACTATAC | 70 | 5.0714316E-6 | 21.142859 | 3 |
AGACCGC | 70 | 5.0714316E-6 | 21.142859 | 17 |