FastQCFastQC Report
Thu 28 Apr 2016
ERR1042220.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042220.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12902793
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT345120.2674769718463281No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT330700.25630109697954545No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT208260.16140691399141255No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT171220.13269995108810936No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA108300.021.7626951
GTATCAA154550.015.21416952
TATACTG24250.014.3422685
GTATTAG31700.014.123031
ACGGACC20200.014.1039618
TCTATAC21800.013.9174323
TCGAACG6150.013.8373993
CTAGTAC7700.013.6948053
CGAACGA8250.013.67878716
GACGGAC21300.013.4624417
AATCGTC8500.013.27647128
TACCGTC13600.012.9227947
CGAACGT6450.012.9069774
TAATACT30300.012.6386154
TAACGCC12600.012.6269854
CGCGCTA11700.012.49145224
ATAACGC15150.012.3333343
ATACCGT17800.012.2640466
AAGACGG27050.012.2421455
TAGACAG21800.012.2201845