Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042220.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12902793 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 34512 | 0.2674769718463281 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33070 | 0.25630109697954545 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 20826 | 0.16140691399141255 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17122 | 0.13269995108810936 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 10830 | 0.0 | 21.762695 | 1 |
GTATCAA | 15455 | 0.0 | 15.2141695 | 2 |
TATACTG | 2425 | 0.0 | 14.342268 | 5 |
GTATTAG | 3170 | 0.0 | 14.12303 | 1 |
ACGGACC | 2020 | 0.0 | 14.103961 | 8 |
TCTATAC | 2180 | 0.0 | 13.917432 | 3 |
TCGAACG | 615 | 0.0 | 13.837399 | 3 |
CTAGTAC | 770 | 0.0 | 13.694805 | 3 |
CGAACGA | 825 | 0.0 | 13.678787 | 16 |
GACGGAC | 2130 | 0.0 | 13.462441 | 7 |
AATCGTC | 850 | 0.0 | 13.276471 | 28 |
TACCGTC | 1360 | 0.0 | 12.922794 | 7 |
CGAACGT | 645 | 0.0 | 12.906977 | 4 |
TAATACT | 3030 | 0.0 | 12.638615 | 4 |
TAACGCC | 1260 | 0.0 | 12.626985 | 4 |
CGCGCTA | 1170 | 0.0 | 12.491452 | 24 |
ATAACGC | 1515 | 0.0 | 12.333334 | 3 |
ATACCGT | 1780 | 0.0 | 12.264046 | 6 |
AAGACGG | 2705 | 0.0 | 12.242145 | 5 |
TAGACAG | 2180 | 0.0 | 12.220184 | 5 |