Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042211.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6843545 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 13829 | 0.202073632890556 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12620 | 0.18440735028409982 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 8118 | 0.11862273134756914 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5910 | 0.0 | 19.658207 | 1 |
CGTCGTA | 580 | 0.0 | 18.181034 | 10 |
TACCGTC | 655 | 0.0 | 18.076336 | 7 |
CCGTCGT | 635 | 0.0 | 16.31496 | 9 |
ACCGTCG | 655 | 0.0 | 16.099236 | 8 |
TATACTG | 1445 | 0.0 | 15.619377 | 5 |
ATACCGT | 895 | 0.0 | 15.29609 | 6 |
TACGACG | 630 | 0.0 | 15.269842 | 5 |
CGGATCG | 255 | 0.0 | 15.235294 | 37 |
CGACGGT | 625 | 0.0 | 15.096 | 7 |
TCTAGCG | 405 | 0.0 | 15.074074 | 28 |
GACGGAC | 970 | 0.0 | 15.06701 | 7 |
ACGGACC | 965 | 0.0 | 14.761659 | 8 |
ACGACGG | 640 | 0.0 | 14.742188 | 6 |
GACGGTA | 675 | 0.0 | 14.251851 | 8 |
AATCGTC | 455 | 0.0 | 14.230769 | 28 |
GTATCAA | 8130 | 0.0 | 14.222017 | 2 |
GTAAACG | 615 | 0.0 | 13.837399 | 27 |
GTATTAG | 1915 | 0.0 | 13.718015 | 1 |
TTAGACT | 995 | 0.0 | 13.572865 | 4 |