Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042206.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3942149 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 10323 | 0.26186224823059706 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9224 | 0.2339840528605083 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 6271 | 0.15907567167045183 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3960 | 0.0 | 21.443182 | 1 |
GACGGAC | 690 | 0.0 | 19.84058 | 7 |
TCTAGCG | 400 | 0.0 | 18.499998 | 28 |
TTAACGG | 205 | 0.0 | 18.04878 | 35 |
CGCAAGA | 850 | 0.0 | 17.84706 | 2 |
ACGGACC | 790 | 0.0 | 17.329113 | 8 |
CGACTTA | 65 | 0.0015808545 | 17.076923 | 10 |
AAGACGG | 920 | 0.0 | 16.690218 | 5 |
TAACGGC | 225 | 0.0 | 16.444445 | 36 |
TATACTG | 620 | 0.0 | 16.112902 | 5 |
CGCAATA | 490 | 0.0 | 15.857142 | 36 |
AGACGGA | 910 | 0.0 | 15.247252 | 6 |
GTATCAA | 5565 | 0.0 | 15.192273 | 2 |
TCTACGC | 160 | 1.0988515E-8 | 15.03125 | 3 |
CTAGCGG | 505 | 0.0 | 15.019802 | 29 |
TACACCG | 285 | 0.0 | 14.929826 | 5 |
ACGACGG | 475 | 0.0 | 14.800001 | 6 |
GTATTAG | 1075 | 0.0 | 14.799999 | 1 |
CGGACCA | 940 | 0.0 | 14.760639 | 9 |
GCGCAAG | 1005 | 0.0 | 14.726368 | 1 |