Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042204.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6664008 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3085 | 0.0 | 19.789303 | 1 |
TCTAGCG | 500 | 0.0 | 17.76 | 28 |
TATACCG | 235 | 0.0 | 15.744679 | 5 |
CTAGCGG | 560 | 0.0 | 15.526787 | 29 |
GTATTAG | 1730 | 0.0 | 15.184971 | 1 |
GTACTAG | 440 | 0.0 | 14.715909 | 1 |
GACGGAC | 895 | 0.0 | 14.469273 | 7 |
ACGCGCG | 590 | 0.0 | 14.423729 | 21 |
CGCGCTA | 600 | 0.0 | 14.183333 | 24 |
TATACTG | 1245 | 0.0 | 14.116466 | 5 |
ATACCGC | 820 | 0.0 | 13.987804 | 27 |
ACGGACC | 945 | 0.0 | 13.5079365 | 8 |
TCTATAC | 990 | 0.0 | 13.454544 | 3 |
GTATCAA | 4505 | 0.0 | 13.428413 | 2 |
TACACCG | 655 | 0.0 | 13.27481 | 5 |
TAGACAG | 1215 | 0.0 | 13.09465 | 5 |
CGCAATA | 700 | 0.0 | 12.950001 | 36 |
GTGTAAG | 1735 | 0.0 | 12.902018 | 1 |
TAACGGC | 280 | 5.456968E-12 | 12.553572 | 36 |
TACCGTC | 665 | 0.0 | 12.518797 | 7 |